Left Cortex Skeleton

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Inheritance graph

Defined in file : brainvisa/toolboxes/morphologist/types/anatomy.py

Used in the following processes

Cortical Fold Arg (3.0)
Morphologist from Freesurfer
Simplified Morphologist 2025

Associated formats

BrainVISA volume formats
DICOM image
Directory
ECAT i image
ECAT v image
FDF image
FreesurferMGH
FreesurferMGZ
GIS image
gz compressed ECAT i image
gz compressed ECAT v image
gz compressed GIS image
gz compressed MINC image
gz compressed NIFTI-1 image
gz compressed SPM image
JPEG image
MINC image
NIFTI-1 image
SPM image
TIFF image
TIFF(.tif) image
Z compressed ECAT i image
Z compressed ECAT v image
Z compressed GIS image
Z compressed SPM image

Associated ontology rules

  • brainvisa-3.0 :
    • {protocol}/{subject}/segment/Lskeleton_<subject>
    {protocol}/{subject}/segment/Lskeleton_<subject>_*
    {protocol}/{subject}/segment/{acquisition}/Lskeleton_<subject>
    {protocol}/{subject}/segment/{acquisition}/Lskeleton_<subject>_*
  • brainvisa-3.1.0 :
    • {protocol}/{subject}/t1mri/{acquisition}/{analysis}/segmentation/Lskeleton_<subject>
  • brainvisa-3.2.0 :
    • {center}/{subject}/t1mri/{acquisition}/{analysis}/segmentation/Lskeleton_<subject>
  • flat :
    • ./Lskeleton_<filename>
  • morphologist-bids-1.0 :
    • sub-{subject}/ses-{session}/anat/t1mri/{acquisition}/{analysis}/segmentation/Lskeleton_<subject>
  • morphologist-bids-2.0 :
    • sub-{subject}/ses-{session}/{bids}/ana-{analysis}/segmentation/sub-<subject>_ses-<session>_<bids>_hemi-L_skeleton

    Key attributes

  • brainvisa-3.0 :
    • protocol ,  subject ,  filename_variable ,  acquisition
  • brainvisa-3.1.0 :
    • protocol ,  subject ,  acquisition ,  analysis
  • brainvisa-3.2.0 :
    • time_point ,  time_duration ,  acquisition_date ,  rescan ,  center ,  subject ,  acquisition ,  analysis
  • morphologist-bids-1.0 :
    • time_point ,  time_duration ,  acquisition_date ,  rescan ,  subject ,  session ,  acquisition ,  analysis
  • morphologist-bids-2.0 :
    • time_point ,  time_duration ,  acquisition_date ,  rescan ,  subject ,  session ,  bids ,  analysis